bio 的反向依赖 以下 Gem 的最新版本需要 bio
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29,228 下载
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29,083 下载
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27,881 下载
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27,461 下载
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27,413 下载
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
26,956 下载
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26,755 下载
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,148 下载
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25,407 下载
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25,253 下载
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
24,910 下载
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24,325 下载
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23,178 下载
transfuse 0.5.0
See summary
22,074 下载
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
21,985 下载
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
21,984 下载
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21,948 下载
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,111 下载
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,111 下载
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
20,954 下载
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
20,929 下载
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,279 下载
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,279 下载
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19,972 下载
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19,879 下载
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19,792 下载
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18,679 下载
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18,055 下载
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17,927 下载
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17,791 下载