Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
254,825 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
242,534 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
137,205 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
132,240 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
130,542 Downloads
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
114,692 Downloads
protk 1.4.4
Commandline tools for proteomics
105,813 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
94,141 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
88,872 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
86,918 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
85,364 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
81,204 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
65,151 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
60,162 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
51,853 Downloads
crb-blast 0.6.9
See summary
51,590 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
49,861 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
48,569 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
46,204 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
44,598 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
42,765 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
42,165 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
42,038 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
41,378 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
39,612 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
35,314 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
34,339 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
33,218 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
32,467 Downloads
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
30,405 Downloads