bioの被依存関係 以下のgemの最新版はbioを必要としています
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17,438 ダウンロード数
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,409 ダウンロード数
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16,924 ダウンロード数
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,590 ダウンロード数
bio-graphics 1.4
Library for visualizing genomic regions
16,476 ダウンロード数
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,442 ダウンロード数
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,717 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,557 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,557 ダウンロード数
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,411 ダウンロード数
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,115 ダウンロード数
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,073 ダウンロード数
exodb 0.1.3
A library for exome sequencing data management
15,001 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,689 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,689 ダウンロード数
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,579 ダウンロード数
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,197 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,042 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,042 ダウンロード数
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,784 ダウンロード数
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,689 ダウンロード数
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,358 ダウンロード数
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,063 ダウンロード数
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,934 ダウンロード数
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,632 ダウンロード数
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,537 ダウンロード数
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,624 ダウンロード数
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,261 ダウンロード数
semin-egor 0.9.3
A new ESST generator
11,060 ダウンロード数
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,946 ダウンロード数