Reverse dependencies for bio Latest version of the following gems require bio
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29.123 Downloads
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29.054 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27.831 Downloads
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27.439 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27.376 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
26.922 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26.738 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26.122 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25.377 Downloads
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25.235 Downloads
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
24.869 Downloads
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24.294 Downloads
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23.164 Downloads
transfuse 0.5.0
See summary
22.041 Downloads
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
21.978 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21.947 Downloads
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
21.945 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21.097 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21.097 Downloads
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
20.938 Downloads
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
20.895 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20.269 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20.269 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19.957 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19.853 Downloads
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19.766 Downloads
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18.668 Downloads
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18.047 Downloads
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17.908 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17.752 Downloads