Dépendances inversées pour bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17 441 Téléchargements
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17 410 Téléchargements
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16 926 Téléchargements
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16 595 Téléchargements
bio-graphics 1.4
Library for visualizing genomic regions
16 478 Téléchargements
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16 443 Téléchargements
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15 717 Téléchargements
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15 558 Téléchargements
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15 558 Téléchargements
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15 417 Téléchargements
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15 116 Téléchargements
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15 076 Téléchargements
exodb 0.1.3
A library for exome sequencing data management
15 004 Téléchargements
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14 694 Téléchargements
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14 694 Téléchargements
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14 579 Téléchargements
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14 198 Téléchargements
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14 043 Téléchargements
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14 043 Téléchargements
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13 787 Téléchargements
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13 692 Téléchargements
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13 362 Téléchargements
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13 065 Téléchargements
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12 942 Téléchargements
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12 632 Téléchargements
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12 537 Téléchargements
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11 630 Téléchargements
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11 270 Téléchargements
semin-egor 0.9.3
A new ESST generator
11 060 Téléchargements
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10 947 Téléchargements