Reverse dependencies for bio Latest version of the following gems require bio
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,829 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
16,726 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,726 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,958 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,766 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,629 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,312 Downloads
exodb 0.1.3
A library for exome sequencing data management
15,289 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,288 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,892 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,779 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,393 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,260 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
14,045 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,863 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,630 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,303 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
13,189 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,821 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,759 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,867 Downloads
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,520 Downloads
semin-egor 0.9.3
A new ESST generator
11,265 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
11,131 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
11,078 Downloads
bio-kb-illumina 0.1.0
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
10,910 Downloads
bio-core 0.0.1
Bioruby core plugins
10,506 Downloads
bio-wolf_psort_wrapper 0.0.3
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...
10,228 Downloads
bio-cnls_screenscraper 0.3.0
Programmatic interface to the cNLS nuclear localisation signal prediction software
10,084 Downloads
bio-mummer 0.2.1
Help for working with the output of the .delta files produced by nucmer and promer
10,017 Downloads